Assembly Summary | |
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Date Published | October 3, 2023 |
Length | 2,330,491 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 5 (3 Circularized) |
Assembly Level | Chromosome |
N50 | 1,664,760 nt |
%GC | 59.45% |
Organism Summary | |
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Name | ATCC® 49042™ |
Isolation | Bronchial secretion |
Biosafety Level | 1 |
Type Strain | No |
Annotations Summary | |
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Number of CDS | 1,787 |
Number of Hypothetical Proteins | 159 |
Number of tRNA | 49 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 1 |
Number of 23s rRNA | 1 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 342,273 |
Oxford Nanopore Median Q Score | 12.3 |
Illumina Read Count | 9,441,874 |
Illumina Mean Coverage Depth | 574.715× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions