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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 |
| Length | 6,122,752 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (10 Circularized) |
| N50 | 5,234,882 nt |
| %GC | 56.05% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-398™ |
| Isolation | Egg-laying poultry facility in Hazon |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 6160 |
| Number of Hypothetical Proteins | 925 |
| Number of tRNA | 70 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 139,164 |
| Oxford Nanopore Median Q Score | 36 |
| Illumina Read Count | 12,240,580 |
| Illumina Mean Coverage Depth | 294.511× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads12,240,580
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination1.65%
PassedAverage depth of coverage294.511×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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