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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | May 14, 2019 |
| Length | 1,645,141 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 1,645,141 nt |
| %GC | 39.19% |
| Organism Summary | |
|---|---|
| Name | ATCC® 700824™ |
| Strain Name | J99 |
| Genotype | cagA+ vacA+ |
| Isolation | Patient with a duodenal ulcer |
| Tags | |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 1512 |
| Number of Hypothetical Proteins | 178 |
| Number of tRNA | 36 |
| Number of 5s rRNA | 2 |
| Number of 16s rRNA | 2 |
| Number of 23s rRNA | 2 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 69,810 |
| Oxford Nanopore Median Q Score | 13 |
| Illumina Read Count | 4,401,767 |
| Illumina Mean Coverage Depth | 584.114× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,401,767
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.36%
PassedEstimated genome contamination0%
PassedAverage depth of coverage584.114×
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