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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 7955™ |
| Strain Name | NCA 3679 (putrifactive anaerobe) [DSM 767, IFO 16411, L.S. McClung 2003, NCIB 8053, NCTC 8594] |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 3,960,008 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 3,904,566 nt |
| %GC | 28.14% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3621 |
| Number of Hypothetical Proteins | 435 |
| Number of tRNA | 79 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 6 |
| Number of 23s rRNA | 6 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 102,138 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 9,029,754 |
| Illumina Mean Coverage Depth | 294.067× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads9,029,754
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.31%
Estimated genome contamination0.69%
Average depth of coverage294.067×
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