ATCC® BAA-1880™ | Anoxystipes aquaeolei

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	November 26, 2024
Length	4,933,142 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (0 Circularized)
N50	2,596,205 nt
%GC	42.06%

Organism Summary
Name	ATCC® BAA-1880™
Isolation	Petroleum reservoir produced water; isolated by R Tanner
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	4508
Number of Hypothetical Proteins	520
Number of tRNA	54
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	8,199
Oxford Nanopore Median Q Score	24
Illumina Read Count	9,671,096
Illumina Mean Coverage Depth	290.677×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads9,671,096

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.83%

PassedEstimated genome contamination0.68%

PassedAverage depth of coverage290.677×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Anoxystipes aquaeolei (ATCC® BAA-1880™)