Organism Summary | |
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Catalog Number | ATCC® VR-1682™ |
Strain Alias | A/Swine/1976/31 (TC-adapted) |
Isolation | Hog. |
Biosafety Level | 2 |
Assembly Summary | |
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Date Published | June 1, 2023 |
Length | 13,632 nt |
Sequencing Technology | Illumina |
Number of Contigs | 8 (0 Circularized) |
Assembly Level | Complete |
N50 | 2,219 nt |
%GC | 43.9% |
Annotations Summary |
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Input Reads Summary | |
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Oxford Nanopore Read Count | 0 |
Oxford Nanopore Median Q Score | 0 |
Illumina Read Count | 2,512,494 |
Illumina Mean Coverage Depth | 1,567.865× |
Illumina Median Q Score | 38 |
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
This virus was assembled and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions