ATCC® BAA-3279™ | Pseudomonas aeruginosa

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	7,074,299 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	6 (0 Circularized)
Assembly Level	Chromosome
N50	4,343,814 nt
%GC	65.7%

Organism Summary
Name	ATCC® BAA-3279™
Isolation	Abscess
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	6,608
Number of Hypothetical Proteins	738
Number of tRNA	64
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	13,654
Oxford Nanopore Median Q Score	35
Illumina Read Count	10,316,368
Illumina Mean Coverage Depth	213.944×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads10,316,368

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness100%

PassedEstimated genome contamination1.19%

PassedAverage depth of coverage213.944×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Pseudomonas aeruginosa (ATCC® BAA-3279™)