Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | February 26, 2020 |
| Length | 5,573,558 bp |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 9 (2 Circularized) |
| N50 | 5,468,582 bp |
| %GC | 50.68% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-2193™ |
| Genotype | Multilocus Sequence Type (MLST): ST-723 |
| Isolation | Stool, Maine |
| Biosafety Level | 2 |
| Type Strain | No |
| Antigenic Properties | Serotype O45:H2 |
| Annotations Summary | |
|---|---|
| Number of CDS | 5,379 |
| Number of Hypothetical Proteins | 1,719 |
| Number of tRNA | 97 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 91,238 |
| Oxford Nanopore Median Q Score | 20 |
| Illumina Read Count | 4,044,386 |
| Illumina Mean Coverage Depth | 148.43× |
| Illumina Median Q Score | 38 |
Loading...
Loading data...
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,044,386
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.96%
PassedEstimated genome contamination0.76%
PassedAverage depth of coverage148.43×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline