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  • Escherichia
  • Escherichia coli

Escherichia coli (ATCC® BAA-2193™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedFebruary 26, 2020
Length5,573,558 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs9 (2 Circularized)
Assembly SummaryChromosome
N505,468,582 nt
%GC50.68%
Organism Summary
NameATCC® BAA-2193™
GenotypeMultilocus Sequence Type (MLST): ST-723
IsolationStool
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS5,379
Number of Hypothetical Proteins1,719
Number of tRNA97
Number of 5s rRNA8
Number of 16s rRNA7
Number of 23s rRNA7
Input Reads Summary
Oxford Nanopore Read Count91,238
Oxford Nanopore Median Q Score20
Illumina Read Count4,044,386
Illumina Mean Coverage Depth148.43×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,044,386
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.96%
PassedEstimated genome contamination0.76%
PassedAverage depth of coverage148.43×
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