ATCC® BAA-2250™ | Bartonella vinsonii subsp. arupensis

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® BAA-2250™
Strain Alias	OK 94-513
Isolation	Blood culture of cattle rancher with bacteremia
Biosafety Level	2
Type Strain	No

Assembly Summary
Date Published	March 24, 2025
Length	1,836,606 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	1,816,033 nt
%GC	38.82%

Annotations Summary
Number of CDS	1497
Number of Hypothetical Proteins	215
Number of tRNA	42
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	50,049
Oxford Nanopore Median Q Score	36
Illumina Read Count	4,160,848
Illumina Mean Coverage Depth	601.737×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	4,160,848
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	100%
Estimated genome contamination	0%
Illumina depth of coverage	601.737×
ONT depth of coverage	234.869×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions