| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 47085™ | 
| Strain Alias | PAO1-LAC | 
| Genotype | lacIq+ delta(lacZ)M15+ tetA+ tetR+ | 
| Tags | MSA Component | 
| Biosafety Level | 2 | 
| Type Strain | No | 
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2019 | 
| Length | 6,297,144 nt | 
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly | 
| Number of Contigs | 3 (All Circularized) | 
| N50 | 6,273,172 nt | 
| %GC | 66.51% | 
| Annotations Summary | |
|---|---|
| Number of CDS | 5751 | 
| Number of Hypothetical Proteins | 400 | 
| Number of tRNA | 63 | 
| Number of 5s rRNA | 4 | 
| Number of 16s rRNA | 4 | 
| Number of 23s rRNA | 4 | 
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 44,692 | 
| Oxford Nanopore Median Q Score | 14 | 
| Illumina Read Count | 4,211,707 | 
| Illumina Mean Coverage Depth | 116.301× | 
| Illumina Median Q Score | 38 | 
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump | 
|---|
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download | 
|---|
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,211,707 | 
| Median Q score, all bases | 38 | 
| Percent of median Q scores per cycle greater than 25 | 1% | 
| Ambiguous content (% N bases) | 0% | 
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.68% | 
| Estimated genome contamination | 0.11% | 
| Illumina depth of coverage | 116.301× |