ATCC logoHOMEGENOMESSEQUENCE SEARCH
DOCUMENTATION
  • Pseudomonas aeruginosa group
  • Pseudomonas aeruginosa

Pseudomonas aeruginosa (ATCC® 47085™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedSeptember 5, 2019
Length6,297,144 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (All Circularized)
Assembly LevelComplete
N506,273,172 nt
%GC66.51%
Organism Summary
NameATCC® 47085™
GenotypelacIq+ delta(lacZ)M15+ tetA+ tetR+
TagsMSA Component
Biosafety Level2
Type StrainNo
Annotations Summary
Number of CDS5,709
Number of Hypothetical Proteins2,264
Number of tRNA73
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count44,692
Oxford Nanopore Median Q Score14
Illumina Read Count4,211,707
Illumina Mean Coverage Depth116.301×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,211,707
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)-

Assembly Quality Control

Metrics assessing the assembly quality
3/3
3 out of 3 passed
PassedEstimated genome completeness99.68%
PassedEstimated genome contamination0.11%
PassedAverage depth of coverage116.301×
Powered byOne Codex
Enhanced Authentication InitiativeData Use AgreementNeed Help? Contact us at ATCC Support
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline