Organism Summary | |
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Catalog Number | ATCC® 47085™ |
Strain Alias | PAO1-LAC |
Genotype | lacIq+ delta(lacZ)M15+ tetA+ tetR+ |
Tags | MSA Component |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | September 5, 2019 |
Length | 6,297,144 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 3 (All Circularized) |
N50 | 6,273,172 nt |
%GC | 66.51% |
Annotations Summary | |
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Number of CDS | 5751 |
Number of Hypothetical Proteins | 400 |
Number of tRNA | 63 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 44,692 |
Oxford Nanopore Median Q Score | 14 |
Illumina Read Count | 4,211,707 |
Illumina Mean Coverage Depth | 116.301× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 4,211,707 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.68% |
Estimated genome contamination | 0.11% |
Average depth of coverage | 116.301× |