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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | September 5, 2019 |
| Length | 6,297,144 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 6,273,172 nt |
| %GC | 66.51% |
| Organism Summary | |
|---|---|
| Name | ATCC® 47085™ |
| Genotype | lacIq+ delta(lacZ)M15+ tetA+ tetR+ |
| Tags | MSA Component |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5751 |
| Number of Hypothetical Proteins | 400 |
| Number of tRNA | 63 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 44,692 |
| Oxford Nanopore Median Q Score | 14 |
| Illumina Read Count | 4,211,707 |
| Illumina Mean Coverage Depth | 116.301× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,211,707
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.68%
PassedEstimated genome contamination0.11%
PassedAverage depth of coverage116.301×
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