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Overview
Genome Browser
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Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 700197™ |
| Strain Alias | VPI D021B-24A-1 |
| Isolation | Localized juvenile periodontitis, BM 19 yrs, 12 mesial subgingival, unaffected site, 3mm PD |
| Tags | Methylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | April 28, 2023 |
| Length | 2,603,336 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 2,603,336 nt |
| %GC | 46.49% |
Annotations Summary | |
|---|---|
| Number of CDS | 2079 |
| Number of Hypothetical Proteins | 321 |
| Number of tRNA | 52 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 119,338 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 5,341,096 |
| Illumina Mean Coverage Depth | 253.812× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 5,341,096 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Assembly Quality Control
Assembly Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 96.98% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 253.812× |
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