ATCC® 43931™ | Stella vacuolata

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 43931™
Strain Alias	VKM B-1552
Isolation	Manure
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	March 5, 2024
Length	5,834,731 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	2,982,166 nt
%GC	70.93%

Annotations Summary
Number of CDS	5493
Number of Hypothetical Proteins	526
Number of tRNA	46
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	30,774
Oxford Nanopore Median Q Score	23
Illumina Read Count	9,076,400
Illumina Mean Coverage Depth	227.789×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	9,076,400
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.71%
Estimated genome contamination	0.88%
Illumina depth of coverage	227.789×
ONT depth of coverage	60.871×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions