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Overview
Annotations
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® 200400™ |
| Strain Alias | DJF/3A/13 |
| Isolation | Mutant of wild type ATCC 9644 |
| Biosafety Level | 1 |
| Type Strain | No |
Assembly Summary | |
|---|---|
| Date Published | October 31, 2023 |
| Length | 37,958,482 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 12 (0 Circularized) |
| N50 | 5,055,874 nt |
| %GC | 46.05% |
Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 749 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 168,591 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 65,325,514 |
| Illumina Mean Coverage Depth | 219.009× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Number of trimmed reads | 65,325,514 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
BUSCO Quality Control
BUSCO Quality Control Metrics | |
|---|---|
| Estimated genome completeness | 98.81% |
| Average depth of coverage | 219.009× |
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