ATCC® VR-571B™ | Chlamydia trachomatis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 24, 2025
Length	1,073,622 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (All Circularized)
Assembly Level	Complete
N50	1,043,877 nt
%GC	41.21%

Organism Summary
Name	ATCC® VR-571B™
Isolation	Conjunctiva from a child with trachoma, human conjunctiva.
Tags	Type Strain
Biosafety Level	2
Type Strain	Yes

Annotations Summary
Number of CDS	923
Number of Hypothetical Proteins	158
Number of tRNA	40
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	217,942
Oxford Nanopore Median Q Score	36
Illumina Read Count	6,524,556
Illumina Mean Coverage Depth	593.961×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads6,524,556

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.06%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.92%

PassedEstimated genome contamination0%

PassedAverage depth of coverage593.961×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Chlamydia trachomatis (ATCC® VR-571B™)