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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 17909™ |
| Strain Alias | NCTC 10308 [3865/60, DSM 6963, NCDC KC 720, P. Baumann 8] |
| Isolation | Duodenum |
| Tags | MSA ComponentType Strain |
| Biosafety Level | 2 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | May 14, 2019 |
| Length | 3,625,391 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (All Circularized) |
| N50 | 3,596,387 nt |
| %GC | 41.37% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3466 |
| Number of Hypothetical Proteins | 601 |
| Number of tRNA | 92 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 20,779 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 4,883,318 |
| Illumina Mean Coverage Depth | 306.114× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,883,318 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0.27% |
| Average depth of coverage | 306.114× |
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