ATCC® BAA-1869™ | Dechlorobacter hydrogenophilus

Overview

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Quality Control

Assembly Summary
Date Published	February 1, 2024
Length	4,680,509 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	4,025,882 nt
%GC	61.04%

Organism Summary
Name	ATCC® BAA-1869™
Isolation	Soil from Army Longhorn ammunition plant; isolated by J Pollock, J Coates
Tags	Type Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	4487
Number of Hypothetical Proteins	628
Number of tRNA	57
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	33,094
Oxford Nanopore Median Q Score	23
Illumina Read Count	12,013,472
Illumina Mean Coverage Depth	378.864×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads12,013,472

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness98.89%

PassedEstimated genome contamination0%

PassedAverage depth of coverage378.864×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Dechlorobacter hydrogenophilus (ATCC® BAA-1869™)