Organism Summary | |
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Catalog Number | ATCC® BAA-3246™ |
Isolation | Urine |
Biosafety Level | 2 |
Type Strain | No |
Assembly Summary | |
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Date Published | February 21, 2025 |
Length | 5,264,482 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 8 (6 Circularized) |
N50 | 4,968,676 nt |
%GC | 50.6% |
Annotations Summary | |
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Number of CDS | 5110 |
Number of Hypothetical Proteins | 241 |
Number of tRNA | 91 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 53,830 |
Oxford Nanopore Median Q Score | 35 |
Illumina Read Count | 11,484,020 |
Illumina Mean Coverage Depth | 321.661× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 11,484,020 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.93% |
Estimated genome contamination | 0.33% |
Average depth of coverage | 321.661× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions