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Overview
Annotations
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Name | ATCC® 66034™ |
| Strain Name | AmMS 232 |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | June 1, 2023 |
| Length | 20,311,038 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 24 (0 Circularized) |
| N50 | 1,279,101 nt |
| %GC | 60.48% |
| Annotations Summary | |
|---|---|
| Number of BUSCO Annotations | 726 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 376,498 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 51,472,853 |
| Illumina Mean Coverage Depth | 326.883× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Protein Product | Type | OrthoDB Group |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads51,472,853
Median Q score, all bases34
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
BUSCO Quality Control
Metrics assessing the assembly quality (from BUSCO).
2 out of 2 passed
PassedEstimated genome completeness94.46%
PassedAverage depth of coverage326.883×
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