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Overview
Related Genomes
Quality Control
Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1789™ |
| Strain Alias | ATCC-2011-9 |
| Isolation | Clinical patient positive for HSV-1. |
| Biosafety Level | 2 |
Assembly Summary | |
|---|---|
| Date Published | November 21, 2025 |
| Length | 152,652 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 107,970 nt |
| %GC | 68.2% |
Annotations Summary | |
|---|---|
| Number of CDS | 83 |
| Number of tRNA | 1 |
Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 158,198 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 4,067,408 |
| Illumina Mean Coverage Depth | 847.759× |
| Illumina Median Q Score | 37 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Microbes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Product
Sequencing Quality Control
Sequencing Quality Control Metrics | |
|---|---|
| Median Q score, all bases | 37 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
This virus was assembled and curated using Oatmeal v3.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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