ATCC® TSD-406™ | Pseudomonas olympii

Overview

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Organism Summary
Catalog Number	ATCC® TSD-406™
Strain Alias	SED1
Isolation	Mount Deception, Olympic National Park (47°48′47″N 123°14′01″W)
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	March 5, 2024
Length	6,899,319 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	6,862,920 nt
%GC	60.36%

Annotations Summary
Number of CDS	6273
Number of Hypothetical Proteins	494
Number of tRNA	67
Number of 5s rRNA	6
Number of 16s rRNA	5
Number of 23s rRNA	5

Input Reads Summary
Oxford Nanopore Read Count	94,459
Oxford Nanopore Median Q Score	26
Illumina Read Count	6,327,744
Illumina Mean Coverage Depth	134.646×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	6,327,744
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	99.68%
Estimated genome contamination	1.01%
Illumina depth of coverage	134.646×
ONT depth of coverage	74.166×

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions