ATCC® BAA-554™ | Delftia tsuruhatensis

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	November 30, 2023
Length	6,681,060 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	1 (0 Circularized)
N50	6,681,060 nt
%GC	66.56%

Organism Summary
Name	ATCC® BAA-554™
Isolation	Sludge; isolated June 1999
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain

Annotations Summary
Number of CDS	5973
Number of Hypothetical Proteins	677
Number of tRNA	76
Number of 5s rRNA	2
Number of 16s rRNA	2
Number of 23s rRNA	2

Input Reads Summary
Oxford Nanopore Read Count	17,682
Oxford Nanopore Median Q Score	25
Illumina Read Count	8,627,468
Illumina Mean Coverage Depth	190.079×
Illumina Median Q Score	34

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads8,627,468

PassedMedian Q score, all bases34

PassedPercent of median Q scores per cycle greater than 251%

PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.85%

PassedEstimated genome contamination0%

PassedAverage depth of coverage190.079×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Delftia tsuruhatensis (ATCC® BAA-554™)