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Overview
Genome Browser
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 15973™ |
| Strain Alias | NCIB 8621 [Delft L. 40, J. Frateur 4 (Collection I)] |
| Isolation | Alcohol turned to vinegar |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | September 29, 2020 |
| Length | 3,693,112 nt |
| Sequencing Technology | Illumina + Oxford Nanopore |
| Number of Contigs | 5 (All Circularized) |
| N50 | 3,596,264 nt |
| %GC | 57.06% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3354 |
| Number of Hypothetical Proteins | 505 |
| Number of tRNA | 50 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 18,545 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 2,661,682 |
| Illumina Mean Coverage Depth | 142.325× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 2,661,682 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 100% |
| Estimated genome contamination | 0% |
| Illumina depth of coverage | 142.325× |
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