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  • Micrococcus luteus

Micrococcus luteus (ATCC® 4698™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMarch 27, 2020
Length2,460,168 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs7 (1 Circularized)
Assembly LevelChromosome
N501,688,884 nt
%GC73.11%
Organism Summary
NameATCC® 4698™
Genotype
Isolation
TagsType Strain
Biosafety Level1
Type StrainYes
Antigenic Properties
Annotations Summary
Number of CDS2,240
Number of Hypothetical Proteins965
Number of tRNA55
Number of 5s rRNA2
Number of 16s rRNA2
Number of 23s rRNA2
Input Reads Summary
Oxford Nanopore Read Count11,629
Oxford Nanopore Median Q Score23
Illumina Read Count7,122,314
Illumina Mean Coverage Depth380.519×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads7,122,314
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness98.7%
PassedEstimated genome contamination0.92%
PassedAverage depth of coverage380.519×
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