ATCC® BAA-233™ | Aeromonas salmonicida subsp. salmonicida

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	June 11, 2025
Length	4,899,759 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
N50	4,856,549 nt
%GC	58.77%

Annotations Summary
Number of CDS	4388
Number of Hypothetical Proteins	418
Number of tRNA	116
Number of 5s rRNA	11
Number of 16s rRNA	10
Number of 23s rRNA	10

Input Reads Summary
Oxford Nanopore Read Count	154,178
Oxford Nanopore Median Q Score	40
Illumina Read Count	3,862,776
Illumina Mean Coverage Depth	204.914×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	3,862,776
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	98.85%
Estimated genome contamination	1.67%
Illumina depth of coverage	204.914×
ONT depth of coverage	113.135×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions