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  • Clostridium beijerinckii

Clostridium beijerinckii (ATCC® 35702™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedMay 1, 2020
Length6,007,460 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N506,007,460 nt
%GC29.87%
Organism Summary
NameATCC® 35702™
IsolationDerived from existing strain
TagsMSA Component
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS5,251
Number of Hypothetical Proteins2,448
Number of tRNA94
Number of 5s rRNA16
Number of 16s rRNA15
Number of 23s rRNA15
Input Reads Summary
Oxford Nanopore Read Count167,107
Oxford Nanopore Median Q Score24
Illumina Read Count4,843,912
Illumina Mean Coverage Depth195.729×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads4,843,912
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.19%
PassedEstimated genome contamination1.61%
PassedAverage depth of coverage195.729×
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