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- unclassified Achromobacter
- Achromobacter sp.
Achromobacter sp. (ATCC® 25297™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 13, 2024 |
| Length | 3,565,576 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 7 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 3,383,525 nt |
| %GC | 41.57% |
| Organism Summary | |
|---|---|
| Name | ATCC® 25297™ |
| Isolation | Soil |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 3,269 |
| Number of Hypothetical Proteins | 475 |
| Number of tRNA | 89 |
| Number of 5s rRNA | 7 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 39,052 |
| Oxford Nanopore Median Q Score | 35 |
| Illumina Read Count | 4,361,498 |
| Illumina Mean Coverage Depth | 181.328× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,361,498
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0.09%
PassedAverage depth of coverage181.328×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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