ATCC® BAA-3285™ | Pseudomonas aeruginosa

Overview

Genome Browser

Related Genomes

Quality Control

Assembly Summary
Date Published	March 24, 2025
Length	6,837,355 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	2 (1 Circularized)
Assembly Level	Chromosome
N50	6,806,742 nt
%GC	65.85%

Organism Summary
Name	ATCC® BAA-3285™
Isolation	Wound
Biosafety Level	2
Type Strain	No

Annotations Summary
Number of CDS	6,377
Number of Hypothetical Proteins	632
Number of tRNA	70
Number of 5s rRNA	4
Number of 16s rRNA	4
Number of 23s rRNA	4

Input Reads Summary
Oxford Nanopore Read Count	19,637
Oxford Nanopore Median Q Score	36
Illumina Read Count	7,072,196
Illumina Mean Coverage Depth	271.774×
Illumina Median Q Score	40

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.

4 out of 4 passed

PassedNumber of trimmed reads7,072,196

PassedMedian Q score, all bases40

PassedPercent of median Q scores per cycle greater than 25100%

PassedAmbiguous content (% N bases)0.09%

Assembly Quality Control

Metrics assessing the assembly quality

3 out of 3 passed

PassedEstimated genome completeness99.03%

PassedEstimated genome contamination0.15%

PassedAverage depth of coverage271.774×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions

Pseudomonas aeruginosa (ATCC® BAA-3285™)