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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 31624™ |
| Strain Alias | SHS 2004 [FERM-P 5450] |
| Isolation | Orange |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | June 30, 2023 |
| Length | 3,653,963 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (2 Circularized) |
| N50 | 3,539,293 nt |
| %GC | 50.74% |
| Annotations Summary | |
|---|---|
| Number of CDS | 3352 |
| Number of Hypothetical Proteins | 271 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 75,187 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 10,042,033 |
| Illumina Mean Coverage Depth | 387.118× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 10,042,033 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 97.13% |
| Estimated genome contamination | 2.11% |
| Average depth of coverage | 387.118× |
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