ATCC® 43208™ | Spiroplasma sp.

Overview

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Quality Control

Assembly Summary
Date Published	December 13, 2024
Length	1,177,924 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	4 (0 Circularized)
N50	962,658 nt
%GC	24.59%

Annotations Summary
Number of CDS	1038
Number of Hypothetical Proteins	305
Number of tRNA	29
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	191,910
Oxford Nanopore Median Q Score	33
Illumina Read Count	6,054,890
Illumina Mean Coverage Depth	761.906×
Illumina Median Q Score	40

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	6,054,890
Median Q score, all bases	40
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	99.62%
Estimated genome contamination	0.75%
Illumina depth of coverage	761.906×
ONT depth of coverage	984.43×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions