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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 13, 2025 |
| Length | 5,807,894 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 4 (3 Circularized) |
| N50 | 5,346,687 nt |
| %GC | 58.49% |
| Organism Summary | |
|---|---|
| Name | ATCC® BAA-3259™ |
| Isolation | Respiratory sputum |
| Tags | |
| Biosafety Level | 2 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 5564 |
| Number of Hypothetical Proteins | 507 |
| Number of tRNA | 87 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 121,743 |
| Oxford Nanopore Median Q Score | 36 |
| Illumina Read Count | 6,754,290 |
| Illumina Mean Coverage Depth | 307.175× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedNumber of trimmed reads6,754,290
PassedMedian Q score, all bases40
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.9%
PassedEstimated genome contamination2.36%
PassedAverage depth of coverage307.175×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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