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  • Acetivibrio
  • Acetivibrio thermocellus

Acetivibrio thermocellus (ATCC® 27405™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedAugust 27, 2019
Length3,847,851 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N503,847,851 nt
%GC38.98%
Organism Summary
NameATCC® 27405™
TagsType Strain
Biosafety Level1
Type StrainYes
Annotations Summary
Number of CDS3,383
Number of Hypothetical Proteins1,735
Number of tRNA56
Number of 5s rRNA4
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count311,919
Oxford Nanopore Median Q Score20
Illumina Read Count2,694,896
Illumina Mean Coverage Depth129.663×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads2,694,896
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.33%
PassedEstimated genome contamination0.67%
PassedAverage depth of coverage129.663×
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