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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 11, 2025 |
| Length | 7,225,896 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 5 (All Circularized) |
| N50 | 3,930,657 nt |
| %GC | 63.96% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-464™ |
| Tags | |
| Annotations Summary | |
|---|---|
| Number of CDS | 6463 |
| Number of Hypothetical Proteins | 1049 |
| Number of tRNA | 65 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 22,002 |
| Oxford Nanopore Median Q Score | 41 |
| Illumina Read Count | 4,594,966 |
| Illumina Mean Coverage Depth | 170.322× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,594,966
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.02%
Assembly Quality Control
Metrics assessing the assembly quality
2 out of 3 passed, 1 requires inspection
PassedEstimated genome completeness97.35%
CautionEstimated genome contamination11.34%
PassedAverage depth of coverage170.322×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.
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