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  • Bifidobacterium longum
  • Bifidobacterium longum subsp. infantis

Bifidobacterium longum subsp. infantis (ATCC® 15697™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedJune 14, 2019
Length2,832,777 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs1 (All Circularized)
Assembly LevelComplete
N502,832,777 nt
%GC59.86%
Organism Summary
NameATCC® 15697™
Genotype
IsolationIntestine of infant
TagsType Strain
Biosafety Level1
Type StrainYes
Antigenic Properties
Annotations Summary
Number of CDS2,551
Number of Hypothetical Proteins1,394
Number of tRNA84
Number of 5s rRNA0
Number of 16s rRNA4
Number of 23s rRNA4
Input Reads Summary
Oxford Nanopore Read Count68,639
Oxford Nanopore Median Q Score16
Illumina Read Count1,498,835
Illumina Mean Coverage Depth107.541×
Illumina Median Q Score38
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads1,498,835
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage107.541×
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