Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 14, 2019 |
| Length | 2,832,777 bp |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 1 (All Circularized) |
| N50 | 2,832,777 bp |
| %GC | 59.86% |
| Organism Summary | |
|---|---|
| Name | ATCC® 15697™ |
| Isolation | Intestine of infant |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,551 |
| Number of Hypothetical Proteins | 1,394 |
| Number of tRNA | 84 |
| Number of 5s rRNA | 0 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 68,639 |
| Oxford Nanopore Median Q Score | 16 |
| Illumina Read Count | 1,498,835 |
| Illumina Mean Coverage Depth | 107.541× |
| Illumina Median Q Score | 38 |
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Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads1,498,835
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness100%
PassedEstimated genome contamination0%
PassedAverage depth of coverage107.541×
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