Organism Summary | |
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Catalog Number | ATCC® 43873™ |
Strain Alias | CDC 3435-85 |
Isolation | Feces |
Tags | Methylation Data |
Biosafety Level | 1 |
Type Strain | No |
Assembly Summary | |
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Date Published | April 24, 2023 |
Length | 4,632,366 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 6 (All Circularized) |
N50 | 4,573,770 nt |
%GC | 47.08% |
Annotations Summary | |
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Number of CDS | 4170 |
Number of Hypothetical Proteins | 327 |
Number of tRNA | 81 |
Number of 5s rRNA | 8 |
Number of 16s rRNA | 7 |
Number of 23s rRNA | 7 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 104,905 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 13,404,907 |
Illumina Mean Coverage Depth | 408.367× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 13,404,907 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.89% |
Estimated genome contamination | 0.25% |
Average depth of coverage | 408.367× |