As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
- Orthoflavivirus japonicum
- Japanese encephalitis virus
Japanese encephalitis virus (ATCC® VR-74™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | July 17, 2024 |
| Length | 10,964 nt |
| Sequencing Technology | Illumina |
| Number of Segments | 1 |
| Assembly Level | Complete |
| N50 | 10,964 nt |
| %GC | 51.43% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-74™ |
| Isolation | Spinal fluid from a fatally infected 6-year-old male |
| Biosafety Level | 3 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Illumina Read Count | 2,592,260 |
| Illumina Mean Coverage Depth | 16,680.438× |
| Illumina Median Q Score | 37 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
2 out of 3 passed, 1 failed
PassedMedian Q score, all bases37
FailedPercent of median Q scores per cycle greater than 2548.34%
PassedAmbiguous content (% N bases)0%
Notes
This virus was assembled and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline