ATCC® 21827™ | Micromonospora sp

Overview

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Quality Control

Assembly Summary
Date Published	February 21, 2025
Length	6,929,048 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	10 (3 Circularized)
N50	2,051,103 nt
%GC	72.71%

Annotations Summary
Number of CDS	5969
Number of Hypothetical Proteins	1094
Number of tRNA	83
Number of 5s rRNA	3
Number of 16s rRNA	3
Number of 23s rRNA	3

Input Reads Summary
Oxford Nanopore Read Count	267,855
Oxford Nanopore Median Q Score	30
Illumina Read Count	11,472,692
Illumina Mean Coverage Depth	237.472×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

All Genomes

	Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length	Download

Displaying Genome

Sequencing Quality Control
Number of trimmed reads	11,472,692
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control
Estimated genome completeness	92.43%
Estimated genome contamination	6.46%
Illumina depth of coverage	237.472×
ONT depth of coverage	228.433×

Notes

This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions