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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 23724™ |
| Strain Alias | C600 [EMG 10, EMG10, NCIB 10222] |
| Genotype | F- supE44 lacY1 thr-1 leuB6 mcrA thi-1 rfbD1 fhuA21 lambda- |
| Tags | Methylation Data |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | November 30, 2021 |
| Length | 4,714,236 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 17 (0 Circularized) |
| N50 | 3,252,313 nt |
| %GC | 50.71% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4483 |
| Number of Hypothetical Proteins | 108 |
| Number of tRNA | 84 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 45,551 |
| Oxford Nanopore Median Q Score | 24 |
| Illumina Read Count | 19,229,586 |
| Illumina Mean Coverage Depth | 557.119× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 19,229,586 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 99.91% |
| Estimated genome contamination | 0.04% |
| Illumina depth of coverage | 557.119× |
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