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Overview
Related Genomes
Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® VR-1344™ |
| Isolation | Cell line (TN-368 T.Ni) infected with wild type A. californica NPV. |
| Biosafety Level | 2 |
| Assembly Summary | |
|---|---|
| Date Published | December 13, 2024 |
| Length | 134,872 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (0 Circularized) |
| Assembly Level | Complete |
| N50 | 133,889 nt |
| %GC | 40.71% |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 47,029 |
| Oxford Nanopore Median Q Score | 35 |
| Illumina Read Count | 5,429,880 |
| Illumina Mean Coverage Depth | 4,193.361× |
| Illumina Median Q Score | 34 |
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
Notes
A plaque purified variant of the 'Autographa californica' NPV wild type used experimentally in insect control. Also used to express foreign peptides and proteins. This virus was assembled and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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