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- Autographa californica multiple nucleopolyhedrovirus
- Autographa californica nuclear polyhedrosis virus AcNPV
Autographa californica nuclear polyhedrosis virus AcNPV (ATCC® VR-1344™)
Overview
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 13, 2024 |
| Length | 134,872 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Segments | 2 |
| Assembly Level | Complete |
| N50 | 133,889 nt |
| %GC | 40.71% |
| Organism Summary | |
|---|---|
| Name | ATCC® VR-1344™ |
| Isolation | Cell line (TN-368 T.Ni) infected with wild type A. californica NPV. |
| Biosafety Level | 2 |
| Annotations Summary |
|---|
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 47,029 |
| Oxford Nanopore Median Q Score | 35 |
| Illumina Read Count | 5,429,880 |
| Illumina Mean Coverage Depth | 4,193.361× |
| Illumina Median Q Score | 34 |
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
3 out of 3 passed
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0.02%
Notes
A plaque purified variant of the 'Autographa californica' NPV wild type used experimentally in insect control. Also used to express foreign peptides and proteins. This virus was assembled and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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