Organism Summary | |
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Catalog Number | ATCC® 27021™ |
Strain Alias | N1-4 (HMT) [NCIB 12606] |
Isolation | Derived from ATCC 13564 |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | November 30, 2021 |
Length | 6,668,113 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (All Circularized) |
N50 | 6,531,925 nt |
%GC | 29.54% |
Annotations Summary | |
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Number of CDS | 5882 |
Number of Hypothetical Proteins | 928 |
Number of tRNA | 81 |
Number of 5s rRNA | 13 |
Number of 16s rRNA | 11 |
Number of 23s rRNA | 11 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 321,955 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 5,650,829 |
Illumina Mean Coverage Depth | 173.264× |
Illumina Median Q Score | 38 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,650,829 |
Median Q score, all bases | 38 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.19% |
Estimated genome contamination | 1.69% |
Average depth of coverage | 173.264× |