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  • Aliivibrio
  • Aliivibrio fischeri

Aliivibrio fischeri (ATCC® 33715™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Summary
Date PublishedOctober 29, 2021
Length4,483,992 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs2 (All Circularized)
Assembly LevelComplete
N503,065,406 nt
%GC38.56%
Organism Summary
NameATCC® 33715™
IsolationSeawater
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS3,995
Number of Hypothetical Proteins1,643
Number of tRNA125
Number of 5s rRNA16
Number of 16s rRNA15
Number of 23s rRNA15
Input Reads Summary
Oxford Nanopore Read Count36,427
Oxford Nanopore Median Q Score25
Illumina Read Count20,278,544
Illumina Mean Coverage Depth602.501×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads20,278,544
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.63%
PassedEstimated genome contamination0.55%
PassedAverage depth of coverage602.501×
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