Assembly Summary | |
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Date Published | February 1, 2024 |
Length | 5,349,347 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 14 (1 Circularized) |
Assembly Level | None |
N50 | 1,045,534 nt |
%GC | 50.56% |
Organism Summary | |
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Name | ATCC® BAA-181™ |
Isolation | Stool of human with hemolytic uremic syndrome (HUS) |
Biosafety Level | 2 |
Type Strain | No |
Annotations Summary | |
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Number of CDS | 5,293 |
Number of Hypothetical Proteins | 268 |
Number of tRNA | 96 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 96,619 |
Oxford Nanopore Median Q Score | 25 |
Illumina Read Count | 9,855,798 |
Illumina Mean Coverage Depth | 269.526× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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No genomes with >95% similarity found.
No genomes found sharing the same genus.
This bacterium was assembled, annotated, and curated using Oatmeal v1.2. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions