Organism Summary | |
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Catalog Number | ATCC® 11883™ |
Strain Alias | Ox1 [CCUG 2086, DSM 1105, JCM 11285, LMG 2235, NCIB 8642, R. Hugh 1081] |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | December 13, 2024 |
Length | 6,693,259 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 2 (1 Circularized) |
N50 | 3,884,112 nt |
%GC | 66.88% |
Annotations Summary | |
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Number of CDS | 6001 |
Number of Hypothetical Proteins | 522 |
Number of tRNA | 65 |
Number of 5s rRNA | 5 |
Number of 16s rRNA | 5 |
Number of 23s rRNA | 5 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 17,259 |
Oxford Nanopore Median Q Score | 34 |
Illumina Read Count | 11,863,222 |
Illumina Mean Coverage Depth | 258.207× |
Illumina Median Q Score | 34 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 11,863,222 |
Median Q score, all bases | 34 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.94% |
Estimated genome contamination | 0.03% |
Average depth of coverage | 258.207× |
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions