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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | December 13, 2024 |
| Length | 6,693,259 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (1 Circularized) |
| N50 | 3,884,112 nt |
| %GC | 66.88% |
| Organism Summary | |
|---|---|
| Name | ATCC® 11883™ |
| Strain Name | Ox1 [CCUG 2086, DSM 1105, JCM 11285, LMG 2235, NCIB 8642, R. Hugh 1081] |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 6001 |
| Number of Hypothetical Proteins | 522 |
| Number of tRNA | 65 |
| Number of 5s rRNA | 5 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 17,259 |
| Oxford Nanopore Median Q Score | 34 |
| Illumina Read Count | 11,863,222 |
| Illumina Mean Coverage Depth | 258.207× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads11,863,222
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness99.94%
PassedEstimated genome contamination0.03%
PassedAverage depth of coverage258.207×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.1. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
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