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Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | August 3, 2020 |
| Length | 4,488,518 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Level | Complete |
| N50 | 3,146,984 nt |
| %GC | 68.98% |
| Organism Summary | |
|---|---|
| Name | ATCC® 17029™ |
| Tags | MSA Component |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,227 |
| Number of Hypothetical Proteins | 466 |
| Number of tRNA | 56 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 110,976 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 4,095,956 |
| Illumina Mean Coverage Depth | 148.479× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads4,095,956
PassedMedian Q score, all bases38
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.28%
PassedEstimated genome contamination8.62%
PassedAverage depth of coverage148.479×
Notes
While this genome does not pass our strict threshold for CheckM contamination, additional analysis indicates it is not contaminated.
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