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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 17029™ |
| Strain Alias | ATH 2.4.9 |
| Tags | MSA Component |
| Biosafety Level | 1 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 3, 2020 |
| Length | 4,488,518 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| N50 | 3,146,984 nt |
| %GC | 68.98% |
| Annotations Summary | |
|---|---|
| Number of CDS | 4227 |
| Number of Hypothetical Proteins | 448 |
| Number of tRNA | 56 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 110,976 |
| Oxford Nanopore Median Q Score | 22 |
| Illumina Read Count | 4,095,956 |
| Illumina Mean Coverage Depth | 148.479× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
All Genomes
| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 4,095,956 |
| Median Q score, all bases | 38 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.28% |
| Estimated genome contamination | 8.62% |
| Average depth of coverage | 148.479× |
Notes
While this genome does not pass our strict threshold for CheckM contamination, additional analysis indicates it is not contaminated.
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