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Overview
Genome Browser
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® 35412™ |
| Strain Alias | DSM 20014 [3] |
| Isolation | Milking machine slime |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Assembly Summary | |
|---|---|
| Date Published | April 5, 2023 |
| Length | 1,805,849 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 2 (All Circularized) |
| N50 | 1,794,079 nt |
| %GC | 39.48% |
| Annotations Summary | |
|---|---|
| Number of CDS | 1772 |
| Number of Hypothetical Proteins | 250 |
| Number of tRNA | 85 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 8 |
| Number of 23s rRNA | 8 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 229,082 |
| Oxford Nanopore Median Q Score | 26 |
| Illumina Read Count | 6,556,155 |
| Illumina Mean Coverage Depth | 435.507× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
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| Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length |
|---|
Displaying Genome
| Sequencing Quality Control | |
|---|---|
| Number of trimmed reads | 6,556,155 |
| Median Q score, all bases | 34 |
| Percent of median Q scores per cycle greater than 25 | 1% |
| Ambiguous content (% N bases) | 0% |
| Assembly Quality Control | |
|---|---|
| Estimated genome completeness | 98.63% |
| Estimated genome contamination | 1.63% |
| Illumina depth of coverage | 435.507× |
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