Organism Summary | |
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Catalog Number | ATCC® TSD-210™ |
Tags | Methylation DataType Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | June 10, 2025 |
Length | 5,211,737 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 10 (1 Circularized) |
N50 | 3,991,925 nt |
%GC | 41.78% |
Annotations Summary | |
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Number of CDS | 4379 |
Number of Hypothetical Proteins | 714 |
Number of tRNA | 49 |
Number of 5s rRNA | 4 |
Number of 16s rRNA | 4 |
Number of 23s rRNA | 4 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 29,610 |
Oxford Nanopore Median Q Score | 42 |
Illumina Read Count | 5,724,414 |
Illumina Mean Coverage Depth | 275.204× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 5,724,414 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 87.87% |
Estimated genome contamination | 6.34% |
Average depth of coverage | 275.204× |
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.