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Overview
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Quality Control
| Assembly Summary | |
|---|---|
| Date Published | June 10, 2025 |
| Length | 5,211,737 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 10 (1 Circularized) |
| N50 | 3,991,925 nt |
| %GC | 41.78% |
| Organism Summary | |
|---|---|
| Name | ATCC® TSD-210™ |
| Tags | Methylation DataType Strain |
| Biosafety Level | 1 |
| Type Strain | |
| Annotations Summary | |
|---|---|
| Number of CDS | 4379 |
| Number of Hypothetical Proteins | 714 |
| Number of tRNA | 49 |
| Number of 5s rRNA | 4 |
| Number of 16s rRNA | 4 |
| Number of 23s rRNA | 4 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 29,610 |
| Oxford Nanopore Median Q Score | 42 |
| Illumina Read Count | 5,724,414 |
| Illumina Mean Coverage Depth | 275.204× |
| Illumina Median Q Score | 40 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads5,724,414
PassedMedian Q score, all bases40
PassedPercent of median Q scores per cycle greater than 251%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
2 out of 3 passed, 1 requires inspection
CautionEstimated genome completeness87.87%
PassedEstimated genome contamination6.34%
PassedAverage depth of coverage275.204×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions. CheckM contamination metric has been omitted from publication QC criteria for this item due to its rarity in the CheckM database as a type strain deposit.
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