Organism Summary | |
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Catalog Number | ATCC® 33241™ |
Strain Alias | NCPPB 2176 [A-1] |
Isolation | Canker of Populus canadensis var. negenerata |
Tags | Type Strain |
Biosafety Level | 1 |
Type Strain | Yes |
Assembly Summary | |
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Date Published | June 11, 2025 |
Length | 4,820,834 nt |
Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
Number of Contigs | 1 (All Circularized) |
N50 | 4,820,834 nt |
%GC | 55.72% |
Annotations Summary | |
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Number of CDS | 4467 |
Number of Hypothetical Proteins | 194 |
Number of tRNA | 83 |
Number of 5s rRNA | 9 |
Number of 16s rRNA | 8 |
Number of 23s rRNA | 8 |
Input Reads Summary | |
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Oxford Nanopore Read Count | 26,026 |
Oxford Nanopore Median Q Score | 42 |
Illumina Read Count | 6,240,194 |
Illumina Mean Coverage Depth | 324.899× |
Illumina Median Q Score | 40 |
Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
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The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):
Taxonomic Name | ATCC Product Page | Strain Alias | Tags | Date Published | Length | Download |
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Sequencing Quality Control | |
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Number of trimmed reads | 6,240,194 |
Median Q score, all bases | 40 |
Percent of median Q scores per cycle greater than 25 | 1% |
Ambiguous content (% N bases) | 0% |
Assembly Quality Control | |
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Estimated genome completeness | 99.17% |
Estimated genome contamination | 1.11% |
Average depth of coverage | 324.899× |
This bacterium was assembled, annotated, and curated using Oatmeal v3.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions