Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Level | |
|---|---|
| Date Published | October 28, 2020 |
| Length | 3,218,995 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 3 (All Circularized) |
| Assembly Summary | Complete |
| N50 | 3,207,664 nt |
| %GC | 44.63% |
| Organism Summary | |
|---|---|
| Name | ATCC® 8014™ |
| Biosafety Level | 1 |
| Type Strain | No |
| Annotations Summary | |
|---|---|
| Number of CDS | 2,992 |
| Number of Hypothetical Proteins | 1,273 |
| Number of tRNA | 63 |
| Number of 5s rRNA | 6 |
| Number of 16s rRNA | 5 |
| Number of 23s rRNA | 5 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 94,048 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 16,687,954 |
| Illumina Mean Coverage Depth | 704.86× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | Uniprot ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads16,687,954
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality (from CheckM).
3 out of 3 passed
PassedEstimated genome completeness99.38%
PassedEstimated genome contamination2.78%
PassedAverage depth of coverage704.86×
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline