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  • Lactiplantibacillus
  • Lactobacillus plantarum

Lactobacillus plantarum (ATCC® 8014™)

Overview
Genome Browser
Related Genomes
Quality Control
Assembly Level
Date PublishedOctober 28, 2020
Length3,218,995 nt
Sequencing TechnologyIllumina + Oxford Nanopore Hybrid Assembly
Number of Contigs3 (All Circularized)
Assembly SummaryComplete
N503,207,664 nt
%GC44.63%
Organism Summary
NameATCC® 8014™
Biosafety Level1
Type StrainNo
Annotations Summary
Number of CDS2,992
Number of Hypothetical Proteins1,273
Number of tRNA63
Number of 5s rRNA6
Number of 16s rRNA5
Number of 23s rRNA5
Input Reads Summary
Oxford Nanopore Read Count94,048
Oxford Nanopore Median Q Score23
Illumina Read Count16,687,954
Illumina Mean Coverage Depth704.86×
Illumina Median Q Score34
ContigStartEndNameProtein ProductEC NumberTypeUniprot IDJump

Most similar genomes

No genomes with >95% similarity found.

Other members of this genus

No genomes found sharing the same genus.

Sequencing Quality Control

Quality control statistics on Illumina sequencing data.
4/4
4 out of 4 passed
PassedNumber of trimmed reads16,687,954
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%

Assembly Quality Control

Metrics assessing the assembly quality (from CheckM).
3/3
3 out of 3 passed
PassedEstimated genome completeness99.38%
PassedEstimated genome contamination2.78%
PassedAverage depth of coverage704.86×
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