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Overview
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Quality Control
| Organism Summary | |
|---|---|
| Catalog Number | ATCC® BAA-3048™ |
| Strain Name | 1136922 |
| Isolation | Urine |
| Tags | GPSMethylation Data |
| Biosafety Level | 2 |
| Type Strain | No |
| Assembly Summary | |
|---|---|
| Date Published | August 3, 2020 |
| Length | 5,277,231 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 8 (All Circularized) |
| N50 | 4,806,076 nt |
| %GC | 50.6% |
| Annotations Summary | |
|---|---|
| Number of CDS | 5130 |
| Number of Hypothetical Proteins | 248 |
| Number of tRNA | 91 |
| Number of 5s rRNA | 8 |
| Number of 16s rRNA | 7 |
| Number of 23s rRNA | 7 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 33,002 |
| Oxford Nanopore Median Q Score | 25 |
| Illumina Read Count | 3,978,388 |
| Illumina Mean Coverage Depth | 154.173× |
| Illumina Median Q Score | 38 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
Number of trimmed reads3,978,388
Median Q score, all bases38
Percent of median Q scores per cycle greater than 251%
Ambiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
Estimated genome completeness99.93%
Estimated genome contamination0.33%
Average depth of coverage154.173×
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