As of May 2024, to guarantee the long-term sustainability of the portal and to continue to provide you with reference-quality genomes, we have transitioned the ATCC Genome Portal over to a supporting membership service. Learn more about ATCC supporting memberships here.
- Azotobacter nigricans
- Azotobacter nigricans subsp. nigricans
Azotobacter nigricans subsp. nigricans (ATCC® 35009™)
Overview
Genome Browser
Related Genomes
Quality Control
| Assembly Summary | |
|---|---|
| Date Published | April 29, 2024 |
| Length | 5,053,380 nt |
| Sequencing Technology | Illumina + Oxford Nanopore Hybrid Assembly |
| Number of Contigs | 19 (1 Circularized) |
| Assembly Level | Chromosome |
| N50 | 846,042 nt |
| %GC | 63.67% |
| Organism Summary | |
|---|---|
| Name | ATCC® 35009™ |
| Tags | Type Strain |
| Biosafety Level | 1 |
| Type Strain | Yes |
| Annotations Summary | |
|---|---|
| Number of CDS | 4,736 |
| Number of Hypothetical Proteins | 633 |
| Number of tRNA | 60 |
| Number of 5s rRNA | 3 |
| Number of 16s rRNA | 3 |
| Number of 23s rRNA | 3 |
| Input Reads Summary | |
|---|---|
| Oxford Nanopore Read Count | 260,159 |
| Oxford Nanopore Median Q Score | 23 |
| Illumina Read Count | 9,174,600 |
| Illumina Mean Coverage Depth | 268.853× |
| Illumina Median Q Score | 34 |
| Contig | Start | End | Name | Protein Product | EC Number | Type | RefSeq ID | Jump |
|---|
Most similar genomes
No genomes with >95% similarity found.
Other members of this genus
No genomes found sharing the same genus.
Sequencing Quality Control
Quality control statistics on Illumina sequencing data.
4 out of 4 passed
PassedNumber of trimmed reads9,174,600
PassedMedian Q score, all bases34
PassedPercent of median Q scores per cycle greater than 25100%
PassedAmbiguous content (% N bases)0%
Assembly Quality Control
Metrics assessing the assembly quality
3 out of 3 passed
PassedEstimated genome completeness98.77%
PassedEstimated genome contamination0.96%
PassedAverage depth of coverage268.853×
Notes
This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions
This website uses cookies to ensure you get the best experience on our website. Learn moreDecline