ATCC® 6207™ | Propionibacterium freudenreichii subsp freudenreichii

Overview

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Quality Control

Organism Summary
Catalog Number	ATCC® 6207™
Strain Alias	[Hitchner No. 33, VPI 394]
Tags	Methylation DataType Strain
Biosafety Level	1
Type Strain	Yes

Assembly Summary
Date Published	June 3, 2024
Length	2,604,254 nt
Sequencing Technology	Illumina + Oxford Nanopore Hybrid Assembly
Number of Contigs	7 (1 Circularized)
N50	2,155,708 nt
%GC	67.37%

Annotations Summary
Number of CDS	2264
Number of Hypothetical Proteins	245
Number of tRNA	45
Number of 5s rRNA	1
Number of 16s rRNA	1
Number of 23s rRNA	1

Input Reads Summary
Oxford Nanopore Read Count	247,465
Oxford Nanopore Median Q Score	26
Illumina Read Count	9,294,190
Illumina Mean Coverage Depth	519.149×
Illumina Median Q Score	34

The following genomes have the greatest genomic similarity to this one (≥95% average nucleotide identity):

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		Taxonomic Name	ATCC Product Page	Strain Alias	Tags	Date Published	Length

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Sequencing Quality Control

Sequencing Quality Control Metrics
Number of trimmed reads	9,294,190
Median Q score, all bases	34
Percent of median Q scores per cycle greater than 25	1%
Ambiguous content (% N bases)	0%

Assembly Quality Control Metrics
Estimated genome completeness	96.61%
Estimated genome contamination	0.65%
Illumina depth of coverage	519.149×
ONT depth of coverage	635.88×

This bacterium was assembled, annotated, and curated using Oatmeal v2.0. See our technical documentation for further details: https://docs.onecodex.com/en/articles/5357065-assembly-qc-and-annotation-pipeline-versions